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> [root@localhost sources.list.d]# apt-get install freenx-server
> Reading Package Lists... Done
> Building Dependency Tree... Done
> E: Couldn't find package freenx-server

karp@newseismix:~ > sudo apt-get install freenx-server
Reading Package Lists... Done
Building Dependency Tree... Done
The following extra packages will be installed:
   bc expect nx python-module-dbus
The following NEW packages will be installed:
   bc expect freenx-server nx python-module-dbus
0 upgraded, 5 newly installed, 0 removed and 0 not upgraded.
Need to get 3368kB of archives.
After unpacking 8050kB of additional disk space will be used.
Do you want to continue? [Y/n]n

apt смотрит на бранч 4.1.

Проверьте /etc/apt/sources.list.d/, м.б. при каком-нибудь обновлении был 
переименован файл с путями. У меня что-то очень похожее было при переезде с 
4.0 на 4.1: мой desktop.alt.list был переименован в desktop.alt.list.rpmsave.


-- 
	С уважением,
		Владимир.